***** Running findPeaks (SeqCode_v1.0) by Enrique Blanco (2020) *****
			***** GitHub  source code: https://github.com/eblancoga/seqcode   *****
			***** SeqCode homepage at: http://ldicrocelab.crg.es            *****


> 0. Running on Wed Jun  9 15:21:16 2021
> 1. Request Memory to Operating System
> 2. Reading Chromosome Sizes
			Dictionary (hash):
			chr8                 | 			 7
			chr9                 | 			 8
			chr10                | 			 9
			chr20                | 			 19
			chr11                | 			 10
			chr21                | 			 20
			chr12                | 			 11
			chrX                 | 			 23
			chr22                | 			 21
			chr13                | 			 12
			chrY                 | 			 24
			chr14                | 			 13
			chr15                | 			 14
			chr16                | 			 15
			chr17                | 			 16
			chr18                | 			 17
			chr19                | 			 18
			chr1                 | 			 0
			chr2                 | 			 1
			chr3                 | 			 2
			chr4                 | 			 3
			chrM                 | 			 22
			chr5                 | 			 4
			chr6                 | 			 5
			chr7                 | 			 6
			Chromosome sizes:
			0                    | 			 249250621
			1                    | 			 243199373
			2                    | 			 198022430
			3                    | 			 191154276
			4                    | 			 180915260
			5                    | 			 171115067
			6                    | 			 159138663
			7                    | 			 146364022
			8                    | 			 141213431
			9                    | 			 135534747
			10                   | 			 135006516
			11                   | 			 133851895
			12                   | 			 115169878
			13                   | 			 107349540
			14                   | 			 102531392
			15                   | 			 90354753
			16                   | 			 81195210
			17                   | 			 78077248
			18                   | 			 59128983
			19                   | 			 63025520
			20                   | 			 48129895
			21                   | 			 51304566
			22                   | 			 16571
			23                   | 			 155270560
			24                   | 			 59373566
	Size was successfully acquired for 25 chromosomes
> 3. Prepare the Output Folder
	The prefix folder ./ exists
	The prefix folder ./catalina/ exists
	The prefix folder ./catalina/results/ exists
	Creating the output folder ./catalina/results/H2AUb_EwS_findPeaks
	Filename for the Bed file ./catalina/results/H2AUb_EwS_findPeaks/H2AUb_EwS.bed
> 4. Processing the BAM/SAM file
	samples/human/H2AUb_EwS.bam: 1025.30 Mb
	Processing Single-end sequencing reads
	Reading:
	[         0 lines]	[    100000 lines]	[    200000 lines]	[    300000 lines]	[    400000 lines]	[    500000 lines]	[    600000 lines]	[    700000 lines]	[    800000 lines]	[    900000 lines]	[   1000000 lines]	[   1100000 lines]	[   1200000 lines]	[   1300000 lines]	[   1400000 lines]	[   1500000 lines]	[   1600000 lines]	[   1700000 lines]	[   1800000 lines]	[   1900000 lines]	[   2000000 lines]	[   2100000 lines]	[   2200000 lines]	[   2300000 lines]	[   2400000 lines]	[   2500000 lines]	[   2600000 lines]	[   2700000 lines]	[   2800000 lines]	[   2900000 lines]	[   3000000 lines]	[   3100000 lines]	[   3200000 lines]	[   3300000 lines]	[   3400000 lines]	[   3500000 lines]	[   3600000 lines]	[   3700000 lines]	[   3800000 lines]	[   3900000 lines]	[   4000000 lines]	[   4100000 lines]	[   4200000 lines]	[   4300000 lines]	[   4400000 lines]	[   4500000 lines]	[   4600000 lines]	[   4700000 lines]	[   4800000 lines]	[   4900000 lines]	[   5000000 lines]	[   5100000 lines]	[   5200000 lines]	[   5300000 lines]	[   5400000 lines]	[   5500000 lines]	[   5600000 lines]	[   5700000 lines]	[   5800000 lines]	[   5900000 lines]	[   6000000 lines]	[   6100000 lines]	[   6200000 lines]	[   6300000 lines]	[   6400000 lines]	[   6500000 lines]	[   6600000 lines]	[   6700000 lines]	[   6800000 lines]	[   6900000 lines]	[   7000000 lines]	[   7100000 lines]	[   7200000 lines]	[   7300000 lines]	[   7400000 lines]	[   7500000 lines]	[   7600000 lines]	[   7700000 lines]	[   7800000 lines]	[   7900000 lines]	[   8000000 lines]	[   8100000 lines]	[   8200000 lines]	[   8300000 lines]	[   8400000 lines]	[   8500000 lines]	[   8600000 lines]	[   8700000 lines]	[   8800000 lines]	[   8900000 lines]	[   9000000 lines]	[   9100000 lines]	[   9200000 lines]	[   9300000 lines]	[   9400000 lines]	[   9500000 lines]	[   9600000 lines]	[   9700000 lines]	[   9800000 lines]	[   9900000 lines]	[  10000000 lines]	[  10100000 lines]	[  10200000 lines]	[  10300000 lines]	[  10400000 lines]	[  10500000 lines]	[  10600000 lines]	[  10700000 lines]	[  10800000 lines]	[  10900000 lines]	[  11000000 lines]	[  11100000 lines]	[  11200000 lines]	[  11300000 lines]	[  11400000 lines]	[  11500000 lines]	[  11600000 lines]	[  11700000 lines]	[  11800000 lines]	[  11900000 lines]	[  12000000 lines]	[  12100000 lines]	[  12200000 lines]	[  12300000 lines]	[  12400000 lines]	[  12500000 lines]	[  12600000 lines]	[  12700000 lines]	[  12800000 lines]	[  12900000 lines]	[  13000000 lines]	[  13100000 lines]	[  13200000 lines]	[  13300000 lines]	[  13400000 lines]	[  13500000 lines]	[  13600000 lines]	[  13700000 lines]	[  13800000 lines]	[  13900000 lines]	[  14000000 lines]	[  14100000 lines]	[  14200000 lines]	[  14300000 lines]	[  14400000 lines]	[  14500000 lines]	[  14600000 lines]	[  14700000 lines]	[  14800000 lines]	[  14900000 lines]	[  15000000 lines]	[  15100000 lines]	[  15200000 lines]	[  15300000 lines]	[  15400000 lines]	[  15500000 lines]	[  15600000 lines]	[  15700000 lines]	[  15800000 lines]	[  15900000 lines]	[  16000000 lines]	[  16100000 lines]	[  16200000 lines]	[  16300000 lines]	[  16400000 lines]	[  16500000 lines]	[  16600000 lines]	[  16700000 lines]	[  16800000 lines]	[  16900000 lines]	[  17000000 lines]	[  17100000 lines]	[  17200000 lines]	[  17300000 lines]	[  17400000 lines]	[  17500000 lines]	[  17600000 lines]	[  17700000 lines]	[  17800000 lines]	[  17900000 lines]	[  18000000 lines]	[  18100000 lines]	[  18200000 lines]	[  18300000 lines]	[  18400000 lines]	[  18500000 lines]	[  18600000 lines]	[  18700000 lines]	[  18800000 lines]	[  18900000 lines]	[  19000000 lines]	[  19100000 lines]	[  19200000 lines]	[  19300000 lines]	[  19400000 lines]	[  19500000 lines]	[  19600000 lines]	[  19700000 lines]	[  19800000 lines]	[  19900000 lines]	[  20000000 lines]	[  20100000 lines]	[  20200000 lines]	[  20300000 lines]	[  20400000 lines]	[  20500000 lines]	[  20600000 lines]	[  20700000 lines]	[  20800000 lines]	[  20900000 lines]	[  21000000 lines]	[  21100000 lines]	[  21200000 lines]	[  21300000 lines]	[  21400000 lines]	[  21500000 lines]	[  21600000 lines]	[  21700000 lines]	[  21800000 lines]	[  21900000 lines]	[  22000000 lines]	[  22100000 lines]	[  22200000 lines]	[  22300000 lines]	[  22400000 lines]	[  22500000 lines]	[  22600000 lines]	[  22700000 lines]	[  22800000 lines]	[  22900000 lines]	[  23000000 lines]	[  23100000 lines]	[  23200000 lines]	[  23300000 lines]	[  23400000 lines]	[  23500000 lines]	[  23600000 lines]	[  23700000 lines]	[  23800000 lines]	[  23900000 lines]	[  24000000 lines]	[  24100000 lines]	[  24200000 lines]	[  24300000 lines]	[  24400000 lines]	[  24500000 lines]	[  24600000 lines]	[  24700000 lines]	24792275 reads of the SAM file processed
	12397368 forward reads acquired
	12394936 reverse reads acquired
> 5. Analyzing the reads to find peaks
	Processing chromosome chr8 (7) - 146364022
	Processing chromosome chr9 (8) - 141213431
	Processing chromosome chr10 (9) - 135534747
	Processing chromosome chr20 (19) - 63025520
	Processing chromosome chr11 (10) - 135006516
	Processing chromosome chr21 (20) - 48129895
	Processing chromosome chr12 (11) - 133851895
	Processing chromosome chrX (23) - 155270560
	Processing chromosome chr22 (21) - 51304566
	Processing chromosome chr13 (12) - 115169878
	Processing chromosome chrY (24) - 59373566
	Processing chromosome chr14 (13) - 107349540
	Processing chromosome chr15 (14) - 102531392
	Processing chromosome chr16 (15) - 90354753
	Processing chromosome chr17 (16) - 81195210
	Processing chromosome chr18 (17) - 78077248
	Processing chromosome chr19 (18) - 59128983
	Processing chromosome chr1 (0) - 249250621
	Processing chromosome chr2 (1) - 243199373
	Processing chromosome chr3 (2) - 198022430
	Processing chromosome chr4 (3) - 191154276
	Processing chromosome chrM (22) - 16571
	Processing chromosome chr5 (4) - 180915260
	Processing chromosome chr6 (5) - 171115067
	Processing chromosome chr7 (6) - 159138663
	25 chromosomes sucessfully included into the peak calling

	Size of the resulting BED file (uncompressed):
	./catalina/results/H2AUb_EwS_findPeaks/H2AUb_EwS.bed: 0.01 Mb
	Compressing the final BED profile

	gzip ./catalina/results/H2AUb_EwS_findPeaks/H2AUb_EwS.bed
	Size of the resulting BED file:
	./catalina/results/H2AUb_EwS_findPeaks/H2AUb_EwS.bed.gz: 0.00 Mb
	__________________________________________________________________________

	Memory usage: 	127.63 Megabytes
	CPU time: 	14.20 secs
	Total time: 	23 secs (0.38 mins)