***** Running recoverChIPLevels (SeqCode_v1.0) by Enrique Blanco (2020) ***** ***** GitHub source code: https://github.com/eblancoga/seqcode ***** ***** SeqCode homepage at: http://ldicrocelab.crg.es ***** > 0. Running on Wed Jun 9 14:48:23 2021 > 1. Request Memory to Operating System > 2. Reading Chromosome Sizes Dictionary (hash): chr8 | 7 chr9 | 8 chr10 | 9 chr11 | 10 chr12 | 11 chrX | 20 chr13 | 12 chrY | 21 chr14 | 13 chr15 | 14 chr16 | 15 chr17 | 16 chr18 | 17 chr19 | 18 chr1 | 0 chr2 | 1 chr3 | 2 chr4 | 3 chrM | 19 chr5 | 4 chr6 | 5 chr7 | 6 Chromosome sizes: 0 | 197195432 1 | 181748087 2 | 159599783 3 | 155630120 4 | 152537259 5 | 149517037 6 | 152524553 7 | 131738871 8 | 124076172 9 | 129993255 10 | 121843856 11 | 121257530 12 | 120284312 13 | 125194864 14 | 103494974 15 | 98319150 16 | 95272651 17 | 90772031 18 | 61342430 19 | 16299 20 | 166650296 21 | 15902555 Size was successfully acquired for 22 chromosomes > 3. Prepare the Output Folder The prefix folder ./ exists The prefix folder ./catalina/ exists The prefix folder ./catalina/results/ exists Creating the output folder ./catalina/results/Mll2_mESC_recoverChIPlevels Filename for the PEAK ChIP levels file ./catalina/results/Mll2_mESC_recoverChIPlevels/PEAKsignal_Mll2_mESC.bed > 4. Processing the BAM/SAM file samples/mouse/Mll2_mESC.bam: 2085.34 Mb Reading:  [ 0 lines] [ 100000 lines] [ 200000 lines] [ 300000 lines] [ 400000 lines] [ 500000 lines] [ 600000 lines] [ 700000 lines] [ 800000 lines] [ 900000 lines] [ 1000000 lines] [ 1100000 lines] [ 1200000 lines] [ 1300000 lines] [ 1400000 lines] [ 1500000 lines] [ 1600000 lines] [ 1700000 lines] [ 1800000 lines] [ 1900000 lines] [ 2000000 lines] [ 2100000 lines] [ 2200000 lines] [ 2300000 lines] [ 2400000 lines] [ 2500000 lines] [ 2600000 lines] [ 2700000 lines] [ 2800000 lines] [ 2900000 lines] [ 3000000 lines] [ 3100000 lines] [ 3200000 lines] [ 3300000 lines] [ 3400000 lines] [ 3500000 lines] [ 3600000 lines] [ 3700000 lines] [ 3800000 lines] [ 3900000 lines] [ 4000000 lines] [ 4100000 lines] [ 4200000 lines] [ 4300000 lines] [ 4400000 lines] [ 4500000 lines] [ 4600000 lines] [ 4700000 lines] [ 4800000 lines] [ 4900000 lines] [ 5000000 lines] [ 5100000 lines] [ 5200000 lines] [ 5300000 lines] [ 5400000 lines] [ 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Processing the List of peaks Reading:  [ 0 lines] [ 1000 lines] [ 2000 lines] [ 3000 lines] [ 4000 lines] [ 5000 lines] [ 6000 lines] [ 7000 lines] [ 8000 lines] [ 9000 lines] [ 10000 lines] [ 11000 lines] [ 12000 lines] [ 13000 lines] [ 14000 lines] [ 15000 lines] [ 16000 lines] [ 17000 lines] [ 18000 lines] [ 19000 lines] [ 20000 lines] [ 21000 lines] [ 22000 lines] [ 23000 lines] [ 24000 lines] [ 25000 lines] [ 26000 lines] [ 27000 lines] [ 28000 lines] [ 29000 lines] [ 30000 lines] [ 31000 lines] [ 32000 lines] [ 33000 lines] [ 34000 lines] [ 35000 lines] [ 36000 lines] [ 37000 lines] [ 38000 lines] [ 39000 lines] [ 40000 lines] [ 41000 lines] [ 42000 lines] [ 43000 lines] [ 44000 lines] [ 45000 lines] [ 46000 lines] 46881 peaks were successfully processed __________________________________________________________________________ Memory usage: 1021.16 Megabytes CPU time: 27.34 secs Total time: 47 secs (0.78 mins)