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PeakAnnotator
BASIC CONFIGURATION
List of peaks (BED format)
Please, provide a plain text file:
Or copy the information (preference for the latter option if both are on):
Genome assembly
Mouse (mm10)
Mouse (mm9)
Human (hg38)
Human (hg19)
Fly (dm3)
FINE TUNNING
Name of the experiment
Rules of association between genes and peaks
Genomic region of each transcript:
Upstream of the TSS (including gene body)
Downstream of the TES (including gene body)
Upstream of the TSS (excluding gene body)
Downstream of the TES (excluding gene body)
Around the TSS
Around the TES
Region size:
50 Kb
25 Kb
10 Kb
5 Kb
2.5 Kb
0.5 Kb
Graphical parameters of the pie charts
Number of genomic features:
Compact
High detail
Low detail
Include grid in the spie chart?
Yes
No
Color 1
(High detail: Distal)
(Low detail: Promoter)
Color 2
(High detail: Proximal)
(Low detail: Intragenic)
Color 3
(High detail: 5'UTR)
(Low detail: Intergenic)
Color 4
(High detail: 3'UTR)
Color 5
(High detail: CDS)
Color 6
(High detail: Introns)
Color 7
(High detail: Intergenic)
The full map of R colors is
here