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ProduceGENEplots
BASIC CONFIGURATION
Catalog of ChIPseq available experiments
List of available samples:
H3K36me3 (mESC) --- GSM1019769
Phf19 (mESC) --- GSM1019775
H3K4me3 (mESC) --- GSM2098958
H3K27me3 (mESC) --- GSM2098952
Epop (mESC) --- GSM2098943
EloB (mESC) --- GSM2098956
Suz12 (mESC) --- GSM2098950
Jarid2 (mESC) --- GSM2430240
RNA PolII Ser5P (mESC) --- GSM850467
RNA PolII Ser2P (mESC) --- GSM850470
H2Aub1 (mESC) --- GSM850471
H3K27me1 (mESC) --- GSM985054
Mel18 (mESC) --- GSM1657387
Rybp (mESC) --- GSM1041375
Cbx6 (mESC) --- GSM2610617
Cbx7 (mESC) --- GSM2610619
Ring1b (mESC) --- GSM2610621
H3K27ac (mESC) --- GSM1163096
H3K4me1 (mESC) --- GSM1163084
H3K4me3 (2i) --- GSM590112
H3K27me3 (2i) --- GSM590116
H3K36me3 (2i) --- GSM590120
H3K9me3 (2i) --- GSM850407
H3K4me1 (2i) --- GSM1355160
H3K27ac (2i) --- GSM1355158
H3K4me3 (HPC7) --- ERR1088386
H3K27me3 (HPC7) --- ERR1088384
H3K36me3 (HPC7) --- ERR1088385
H3K27ac (HPC7) --- GSM1329815
H3K4me3 (K562) --- GSM733680
H3K27me3 (K562) --- GSM733658
H3K36me3 (K562) --- GSM733714
H3K4me3 (DU145) --- GSM2187240
H3K27me3 (DU145) --- GSM2187237
H3K4me1 (DU145) --- GSM2187238
H3K4me3 (WID) --- GSM593408
H3K27me3 (WID) --- GSM593409
H3K36me3 (WID) --- GSM593410
RNA PolII Ser5P (WID) --- GSM593412
RNA PolII Ser2P (WID) --- GSM593411
H3K4me1 (WID) --- GSM1182471
H3K27ac (WID) --- GSM1182472
H3K9ac (WID) --- GSM1363590
Cabut (WID) --- GSM1005586
Brinker (WID) --- GSM
A1 --- unassigned
A2 --- unassigned
K --- unassigned
Do you wish to include a control sample?
No
IgG (mESC) --- GSM2098945
Epop KD (mESC) --- GSM2098944
IgG (mESC) --- GSM2610620
WCE (mESC) --- GSM1163130
Input (2i) --- GSM1355163
IgG (HPC7) --- E-MTAB-3954: ERR1088408
INPUT (K562) --- GSM733780
INPUT (DU145) --- GSM2187241
INPUT (WID) --- GSM593413
I1 --- unassigned
Number of subsets of genes to be included
1
2
3
4
5
Subsets of target genes
FILE
NAME
File of target genes 1:
Geneset 1:
File of target genes 2:
Geneset 2:
File of target genes 3:
Geneset 3:
File of target genes 4:
Geneset 4:
File of target genes 5:
Geneset 5:
FINE TUNNING
Graphical parameters of each list of genes
COLOR
STYLE
WIDTH
TRANSPARENCY
List of genes 1:
solid
dashed
dotted
1
2
3
4
5
6
7
8
None
Medium
Maximum
List of genes 2:
solid
dashed
dotted
1
2
3
4
5
6
7
8
None
Medium
Maximum
List of genes 3:
solid
dashed
dotted
1
2
3
4
5
6
7
8
None
Medium
Maximum
List of genes 4:
solid
dashed
dotted
1
2
3
4
5
6
7
8
None
Medium
Maximum
List of genes 5:
solid
dashed
dotted
1
2
3
4
5
6
7
8
None
Medium
Maximum
CONTROL:
solid
dashed
dotted
1
2
3
4
5
6
7
8
None
Medium
Maximum
The full map of R colors is
here
General graphical parameters
Background color:
Foreground color:
Legend font size:
1
2
0.5
0.75
TSS line style:
solid
dashed
dotted
TSS line width:
0.1
0.5
1
2
TSS line color:
Y minimum value:
1
0.75
0.5
0.1
0.05
0.025
0
Y maximum value:
Max + 20
Max + 10
Max + 5
Max + 2
Max + 1
Max + 0.05
Max + 0.025
Max + 0