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BASIC CONFIGURATION
List of genes
Number of ChIPseq experiments to be included
1
2
3
4
5
Catalog of ChIPseq available experiments
Sample 1:
H3K36me3 (mESC) --- GSM1019769
Phf19 (mESC) --- GSM1019775
H3K4me3 (mESC) --- GSM2098958
H3K27me3 (mESC) --- GSM2098952
Epop (mESC) --- GSM2098943
EloB (mESC) --- GSM2098956
Suz12 (mESC) --- GSM2098950
Jarid2 (mESC) --- GSM2430240
IgG (mESC) --- GSM2098945
RNA PolII Ser5P (mESC) --- GSM850467
RNA PolII Ser2P (mESC) --- GSM850470
H2Aub1 (mESC) --- GSM850471
H3K27me1 (mESC) --- GSM985054
Mel18 (mESC) --- GSM1657387
Rybp (mESC) --- GSM1041375
Cbx6 (mESC) --- GSM2610617
Cbx7 (mESC) --- GSM2610619
Ring1b (mESC) --- GSM2610621
IgG (mESC) --- GSM2610620
H3K27ac (mESC) --- GSM1163096
H3K4me1 (mESC) --- GSM1163084
WCE (mESC) --- GSM1163130
H3K4me3 (2i) --- GSM590112
H3K27me3 (2i) --- GSM590116
H3K36me3 (2i) --- GSM590120
H3K9me3 (2i) --- GSM850407
H3K4me1 (2i) --- GSM1355160
H3K27ac (2i) --- GSM1355158
Input (2i) --- GSM1355163
H3K4me3 (HPC7) --- ERR1088386
H3K27me3 (HPC7) --- ERR1088384
H3K36me3 (HPC7) --- ERR1088385
IgG (HPC7) --- E-MTAB-3954: ERR1088408
H3K27ac (HPC7) --- GSM1329815
H3K4me3 (K562) --- GSM733680
H3K27me3 (K562) --- GSM733658
H3K36me3 (K562) --- GSM733714
INPUT (K562) --- GSM733780
H3K4me3 (DU145) --- GSM2187240
H3K27me3 (DU145) --- GSM2187237
H3K4me1 (DU145) --- GSM2187238
INPUT (DU145) --- GSM2187241
H3K4me3 (WID) --- GSM593408
H3K27me3 (WID) --- GSM593409
H3K36me3 (WID) --- GSM593410
RNA PolII Ser5P (WID) --- GSM593412
RNA PolII Ser2P (WID) --- GSM593411
INPUT (WID) --- GSM593413
H3K4me1 (WID) --- GSM1182471
H3K27ac (WID) --- GSM1182472
H3K9ac (WID) --- GSM1363590
Cabut (WID) --- GSM1005586
Brinker (WID) --- GSM
A1 --- unassigned
A2 --- unassigned
K --- unassigned
I1 --- unassigned
 
Sample 2:
H3K36me3 (mESC) --- GSM1019769
Phf19 (mESC) --- GSM1019775
H3K4me3 (mESC) --- GSM2098958
H3K27me3 (mESC) --- GSM2098952
Epop (mESC) --- GSM2098943
EloB (mESC) --- GSM2098956
Suz12 (mESC) --- GSM2098950
Jarid2 (mESC) --- GSM2430240
IgG (mESC) --- GSM2098945
RNA PolII Ser5P (mESC) --- GSM850467
RNA PolII Ser2P (mESC) --- GSM850470
H2Aub1 (mESC) --- GSM850471
H3K27me1 (mESC) --- GSM985054
Mel18 (mESC) --- GSM1657387
Rybp (mESC) --- GSM1041375
Cbx6 (mESC) --- GSM2610617
Cbx7 (mESC) --- GSM2610619
Ring1b (mESC) --- GSM2610621
IgG (mESC) --- GSM2610620
H3K27ac (mESC) --- GSM1163096
H3K4me1 (mESC) --- GSM1163084
WCE (mESC) --- GSM1163130
H3K4me3 (2i) --- GSM590112
H3K27me3 (2i) --- GSM590116
H3K36me3 (2i) --- GSM590120
H3K9me3 (2i) --- GSM850407
H3K4me1 (2i) --- GSM1355160
H3K27ac (2i) --- GSM1355158
Input (2i) --- GSM1355163
H3K4me3 (HPC7) --- ERR1088386
H3K27me3 (HPC7) --- ERR1088384
H3K36me3 (HPC7) --- ERR1088385
IgG (HPC7) --- E-MTAB-3954: ERR1088408
H3K27ac (HPC7) --- GSM1329815
H3K4me3 (K562) --- GSM733680
H3K27me3 (K562) --- GSM733658
H3K36me3 (K562) --- GSM733714
INPUT (K562) --- GSM733780
H3K4me3 (DU145) --- GSM2187240
H3K27me3 (DU145) --- GSM2187237
H3K4me1 (DU145) --- GSM2187238
INPUT (DU145) --- GSM2187241
H3K4me3 (WID) --- GSM593408
H3K27me3 (WID) --- GSM593409
H3K36me3 (WID) --- GSM593410
RNA PolII Ser5P (WID) --- GSM593412
RNA PolII Ser2P (WID) --- GSM593411
INPUT (WID) --- GSM593413
H3K4me1 (WID) --- GSM1182471
H3K27ac (WID) --- GSM1182472
H3K9ac (WID) --- GSM1363590
Cabut (WID) --- GSM1005586
Brinker (WID) --- GSM
A1 --- unassigned
A2 --- unassigned
K --- unassigned
I1 --- unassigned
Sample 3:
H3K36me3 (mESC) --- GSM1019769
Phf19 (mESC) --- GSM1019775
H3K4me3 (mESC) --- GSM2098958
H3K27me3 (mESC) --- GSM2098952
Epop (mESC) --- GSM2098943
EloB (mESC) --- GSM2098956
Suz12 (mESC) --- GSM2098950
Jarid2 (mESC) --- GSM2430240
IgG (mESC) --- GSM2098945
RNA PolII Ser5P (mESC) --- GSM850467
RNA PolII Ser2P (mESC) --- GSM850470
H2Aub1 (mESC) --- GSM850471
H3K27me1 (mESC) --- GSM985054
Mel18 (mESC) --- GSM1657387
Rybp (mESC) --- GSM1041375
Cbx6 (mESC) --- GSM2610617
Cbx7 (mESC) --- GSM2610619
Ring1b (mESC) --- GSM2610621
IgG (mESC) --- GSM2610620
H3K27ac (mESC) --- GSM1163096
H3K4me1 (mESC) --- GSM1163084
WCE (mESC) --- GSM1163130
H3K4me3 (2i) --- GSM590112
H3K27me3 (2i) --- GSM590116
H3K36me3 (2i) --- GSM590120
H3K9me3 (2i) --- GSM850407
H3K4me1 (2i) --- GSM1355160
H3K27ac (2i) --- GSM1355158
Input (2i) --- GSM1355163
H3K4me3 (HPC7) --- ERR1088386
H3K27me3 (HPC7) --- ERR1088384
H3K36me3 (HPC7) --- ERR1088385
IgG (HPC7) --- E-MTAB-3954: ERR1088408
H3K27ac (HPC7) --- GSM1329815
H3K4me3 (K562) --- GSM733680
H3K27me3 (K562) --- GSM733658
H3K36me3 (K562) --- GSM733714
INPUT (K562) --- GSM733780
H3K4me3 (DU145) --- GSM2187240
H3K27me3 (DU145) --- GSM2187237
H3K4me1 (DU145) --- GSM2187238
INPUT (DU145) --- GSM2187241
H3K4me3 (WID) --- GSM593408
H3K27me3 (WID) --- GSM593409
H3K36me3 (WID) --- GSM593410
RNA PolII Ser5P (WID) --- GSM593412
RNA PolII Ser2P (WID) --- GSM593411
INPUT (WID) --- GSM593413
H3K4me1 (WID) --- GSM1182471
H3K27ac (WID) --- GSM1182472
H3K9ac (WID) --- GSM1363590
Cabut (WID) --- GSM1005586
Brinker (WID) --- GSM
A1 --- unassigned
A2 --- unassigned
K --- unassigned
I1 --- unassigned
Sample 4:
H3K36me3 (mESC) --- GSM1019769
Phf19 (mESC) --- GSM1019775
H3K4me3 (mESC) --- GSM2098958
H3K27me3 (mESC) --- GSM2098952
Epop (mESC) --- GSM2098943
EloB (mESC) --- GSM2098956
Suz12 (mESC) --- GSM2098950
Jarid2 (mESC) --- GSM2430240
IgG (mESC) --- GSM2098945
RNA PolII Ser5P (mESC) --- GSM850467
RNA PolII Ser2P (mESC) --- GSM850470
H2Aub1 (mESC) --- GSM850471
H3K27me1 (mESC) --- GSM985054
Mel18 (mESC) --- GSM1657387
Rybp (mESC) --- GSM1041375
Cbx6 (mESC) --- GSM2610617
Cbx7 (mESC) --- GSM2610619
Ring1b (mESC) --- GSM2610621
IgG (mESC) --- GSM2610620
H3K27ac (mESC) --- GSM1163096
H3K4me1 (mESC) --- GSM1163084
WCE (mESC) --- GSM1163130
H3K4me3 (2i) --- GSM590112
H3K27me3 (2i) --- GSM590116
H3K36me3 (2i) --- GSM590120
H3K9me3 (2i) --- GSM850407
H3K4me1 (2i) --- GSM1355160
H3K27ac (2i) --- GSM1355158
Input (2i) --- GSM1355163
H3K4me3 (HPC7) --- ERR1088386
H3K27me3 (HPC7) --- ERR1088384
H3K36me3 (HPC7) --- ERR1088385
IgG (HPC7) --- E-MTAB-3954: ERR1088408
H3K27ac (HPC7) --- GSM1329815
H3K4me3 (K562) --- GSM733680
H3K27me3 (K562) --- GSM733658
H3K36me3 (K562) --- GSM733714
INPUT (K562) --- GSM733780
H3K4me3 (DU145) --- GSM2187240
H3K27me3 (DU145) --- GSM2187237
H3K4me1 (DU145) --- GSM2187238
INPUT (DU145) --- GSM2187241
H3K4me3 (WID) --- GSM593408
H3K27me3 (WID) --- GSM593409
H3K36me3 (WID) --- GSM593410
RNA PolII Ser5P (WID) --- GSM593412
RNA PolII Ser2P (WID) --- GSM593411
INPUT (WID) --- GSM593413
H3K4me1 (WID) --- GSM1182471
H3K27ac (WID) --- GSM1182472
H3K9ac (WID) --- GSM1363590
Cabut (WID) --- GSM1005586
Brinker (WID) --- GSM
A1 --- unassigned
A2 --- unassigned
K --- unassigned
I1 --- unassigned
Sample 5:
H3K36me3 (mESC) --- GSM1019769
Phf19 (mESC) --- GSM1019775
H3K4me3 (mESC) --- GSM2098958
H3K27me3 (mESC) --- GSM2098952
Epop (mESC) --- GSM2098943
EloB (mESC) --- GSM2098956
Suz12 (mESC) --- GSM2098950
Jarid2 (mESC) --- GSM2430240
IgG (mESC) --- GSM2098945
RNA PolII Ser5P (mESC) --- GSM850467
RNA PolII Ser2P (mESC) --- GSM850470
H2Aub1 (mESC) --- GSM850471
H3K27me1 (mESC) --- GSM985054
Mel18 (mESC) --- GSM1657387
Rybp (mESC) --- GSM1041375
Cbx6 (mESC) --- GSM2610617
Cbx7 (mESC) --- GSM2610619
Ring1b (mESC) --- GSM2610621
IgG (mESC) --- GSM2610620
H3K27ac (mESC) --- GSM1163096
H3K4me1 (mESC) --- GSM1163084
WCE (mESC) --- GSM1163130
H3K4me3 (2i) --- GSM590112
H3K27me3 (2i) --- GSM590116
H3K36me3 (2i) --- GSM590120
H3K9me3 (2i) --- GSM850407
H3K4me1 (2i) --- GSM1355160
H3K27ac (2i) --- GSM1355158
Input (2i) --- GSM1355163
H3K4me3 (HPC7) --- ERR1088386
H3K27me3 (HPC7) --- ERR1088384
H3K36me3 (HPC7) --- ERR1088385
IgG (HPC7) --- E-MTAB-3954: ERR1088408
H3K27ac (HPC7) --- GSM1329815
H3K4me3 (K562) --- GSM733680
H3K27me3 (K562) --- GSM733658
H3K36me3 (K562) --- GSM733714
INPUT (K562) --- GSM733780
H3K4me3 (DU145) --- GSM2187240
H3K27me3 (DU145) --- GSM2187237
H3K4me1 (DU145) --- GSM2187238
INPUT (DU145) --- GSM2187241
H3K4me3 (WID) --- GSM593408
H3K27me3 (WID) --- GSM593409
H3K36me3 (WID) --- GSM593410
RNA PolII Ser5P (WID) --- GSM593412
RNA PolII Ser2P (WID) --- GSM593411
INPUT (WID) --- GSM593413
H3K4me1 (WID) --- GSM1182471
H3K27ac (WID) --- GSM1182472
H3K9ac (WID) --- GSM1363590
Cabut (WID) --- GSM1005586
Brinker (WID) --- GSM
A1 --- unassigned
A2 --- unassigned
K --- unassigned
I1 --- unassigned
FINE TUNNING
Captions and titles
Name of the geneset:
Title text:
Graphical parameters of each heatmap
FOREGROUND COLOR
BACKGROUND COLOR
Sample 1:
Sample 2:
Sample 3:
Sample 4:
Sample 5:
The full map of R colors is
here
General graphical parameters
Background color:
Foreground color:
Generate a uniform heatmap?
Yes
NO
Normalize with the same value?
No
1
2
3
5
10