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MAPlotter
BASIC CONFIGURATION
Upload the input file
DESeq2_demofile_stats.txt.gz (gzipped)
Set the working mode
(1) DESeq2 file
(2) Tabular file
Choose the number of genes to assign labels
0
1
2
3
4
5
6
7
8
9
10
OPTIONAL:
List of elements to be highlighted
Terms:
(Tabular files) Names of fields for X axis and Y axis
Mandatory field descriptors in your tabular file:
Column1 is baseMean
Column2 is log2FoldChange
Column3 is padj
FINE TUNNING
Captions and titles
Title:
Label for X axis:
Label for Y axis:
Graphical parameters
FC cutoff:
FDR cutoff:
10
5
2
1.5
1
5
1
0.5
0.1
0.05
0.025
0
Point size:
Alpha coefficient:
5
3
2
1
0.5
1
0.75
0.5
0.25
0
Legend position:
Color for Up:
top
bottom
left
right
none
Color for Down:
Color for the rest of points:
Labels in Bold:
Labels in Italics:
yes
no
yes
no
Boxed labels?
Number of labels:
Yes
No
20
15
10
5
0
Label element size:
20
15
10
5
3
2
1
The full map of R colors is
here